Margarita Grushanina

Research Associate for Bayesian Statistics and Causal Inference at Imperial College London

View My GitHub Profile

Me_Paris

About me

I am a Research Associate for Bayesian Statistics and Causal Inference at the School of Public Health, Imperial College London, working with Verena Zuber and Leonardo Bottolo. My research focuses on developing Bayesian latent variable models for high-dimensional molecular data, including gene expression and other omics data. I am particularly interested in latent factor models, biclustering, structured sparsity, clustering and scalable inference, with the aim of identifying meaningful latent structure in complex biological datasets. My current work focuses on Bayesian biclustering methods for heterogeneous molecular data, including multi-study and single-cell settings, as well as scalable variational inference for Bayesian latent representation models.

In 2023, I obtained my PhD at Vienna University of Economics and Business under the supervision of Sylvia Frühwirth-Schnatter and Alfred Stiassny. My dissertation, “Bayesian methods for unsupervised data analysis in application to data sets exhibiting non-Gaussianity,” focused on uncovering structure in complex data with minimal assumptions. It includes a review of infinite factorisation models, a latent factor model relaxing the Gaussian assumption, and flexible mixtures of factor analysers that enable automatic inference of both cluster structure and latent dimensionality. This work led to a recent publication in Bayesian Analysis.

Prior to academia, I worked for several years at the Research Department of Erste Group as a Quantitative Analyst, where I was responsible for macroeconometric forecasting and time series modelling.

My detailed CV can be found here: CV

Research Interests

Current projects

Multi-study factor regression biclustering
A Bayesian latent factor model for high-dimensional molecular data collected across multiple studies. The model combines multi-study factor analysis, factor regression and biclustering within a unified framework, allowing shared biological structure to be separated from study-specific variation while identifying subsets of molecular features that are active only in subsets of samples. The accompanying inference framework is based on scalable variational approximations, together with post-processing procedures for assessing identification of the recovered shared latent factors. A working draft of the manuscript is available at: Multi-study factor regression biclustering

Bayesian biclustering for multi-subject single-cell transcriptomic count data
A Bayesian latent variable model for overdispersed single-cell RNA-seq count data with repeated measurements across individuals. The model introduces subject-specific activation of shared latent factors, allowing biological processes to be shared only across subsets of subjects while accounting for within-subject dependence and gene-specific overdispersion. Inference is carried out using variational Bayes with augmentation-based methods for tractable computation of all key model parameters.

Upcoming Talks

Publications

Papers and Preprints

Conference Proceedings

Discussions

Presentations & Posters

Selective Work Experience

Miscellanea

I love music and have studied classical piano and vocals for some years. I have also participated in several summer courses in jazz and creative music/songwriting at Guildhall School of Music and Drama as well as had some amateur performances at various events.

Contact me

m.grushanina at imperial.ac.uk
margarita.grushanina at gmail.com